Index

B

build_B_matrices_for_R2() (in module wlcstat.chromo)

C

calc_int_mag() (in module wlcstat.wlc_lcpoly) (in module wlcstat.wlcstruc)

calc_s4_int_mag() (in module wlcstat.wlcstruc)

D

draw_cells() (in module wlcstat.poly_dyn)

E

elastic_lcpoly() (in module wlcstat.wlc_lcpoly) elastic_rr() (in module wlcstat.wlc_lcpoly) end_to_end_corr() (in module wlcstat.poly_dyn) eval_a_l_m() (in module wlcstat.wlc_lcpoly) eval_b_l_m() (in module wlcstat.wlc_lcpoly)

eval_legendre() (in module wlcstat.wlcstruc) eval_poles_and_residues() (in module wlcstat.wlcgreen) eval_poles_lcpoly() (in module wlcstat.wlc_lcpoly) eval_r2_free() (in module wlcstat.poly_confine) eval_r2_surf() (in module wlcstat.poly_confine) eval_residues_lcpoly() (in module wlcstat.wlc_lcpoly)

F

flow_spec_active() (in module wlcstat.active_brown)

G

gen_chromo_conf() (in module wlcstat.chromo) gen_chromo_pymol_file() (in module wlcstat.chromo) gen_conf_rouse_active() (in module wlcstat.active_brown)

gen_pymol_file() (in module wlcstat.active_brown) generate_example_cell() (in module wlcstat.poly_dyn) gwlc_r() (in module wlcstat.wlcgreen)

H

H() (in module wlcstat.chromo) H_oriented() (in module wlcstat.chromo) H_rot() (in module wlcstat.chromo) H_rot_oriented() (in module wlcstat.chromo) Hb() (in module wlcstat.chromo)

Hk() (in module wlcstat.chromo) Hn() (in module wlcstat.chromo) Hn_oriented() (in module wlcstat.chromo) Htau() (in module wlcstat.chromo) Hu() (in module wlcstat.chromo) Hu_oriented() (in module wlcstat.chromo)

K

kvals (in module wlcstat.chromo)

L

linear_mid_msd() (in module wlcstat.poly_dyn) linear_mid_msd_subpoly() (in module wlcstat.poly_dyn) linear_mscd() (in module wlcstat.poly_dyn)

linear_mscd_subpoly() (in module wlcstat.poly_dyn) linear_msd_confine() (in module wlcstat.poly_dyn) linear_msd_confine_plateau() (in module wlcstat.poly_dyn)

M

m_lcpoly() (in module wlcstat.wlc_lcpoly) minimum_energy_no_sterics_linker_only() (in module wlcstat.chromo) model_mscd() (in module wlcstat.poly_dyn) model_mscd_confine() (in module wlcstat.poly_dyn) model_mscd_subpoly() (in module wlcstat.poly_dyn) model_mscd_subpoly_1d() (in module wlcstat.poly_dyn) model_mscd_subpoly_simple() (in module wlcstat.poly_dyn) model_plateau() (in module wlcstat.poly_dyn) module wlcstat.active_brown wlcstat.chromo wlcstat.poly_confine wlcstat.poly_dyn wlcstat.wlc_lcpoly wlcstat.wlcave wlcstat.wlcgreen wlcstat.wlcstruc

mscd_active() (in module wlcstat.active_brown) mscd_plateau_active() (in module wlcstat.active_brown) msd_active() (in module wlcstat.active_brown)

N

normalize_HX() (in module wlcstat.chromo)

O

OmegaC() (in module wlcstat.chromo) OmegaE2E() (in module wlcstat.chromo)

OmegaNextAssoc() (in module wlcstat.chromo) OmegaNextEntry() (in module wlcstat.chromo) OmegaNextExit() (in module wlcstat.chromo)

P

phi_active() (in module wlcstat.active_brown)

Q

q_lcpoly() (in module wlcstat.wlc_lcpoly)

R

r2_ave() (in module wlcstat.wlcave) r2_kinked_twlc() (in module wlcstat.chromo) r_2_lcpoly() (in module wlcstat.wlc_lcpoly) resolve_wrapping_params() (in module wlcstat.chromo) rg2_ave() (in module wlcstat.wlcave)

ring_mscd() (in module wlcstat.poly_dyn) ring_mscd_subpoly() (in module wlcstat.poly_dyn) Rx() (in module wlcstat.chromo) Ry() (in module wlcstat.chromo) Rz() (in module wlcstat.chromo) rz4_ave() (in module wlcstat.wlcave)

S

s2_wlc() (in module wlcstat.wlcstruc) s3_wlc() (in module wlcstat.wlcstruc)

s4_wlc() (in module wlcstat.wlcstruc) structure_factor_active() (in module wlcstat.active_brown)

W

wlcstat.active_brown module wlcstat.chromo module wlcstat.poly_confine module wlcstat.poly_dyn module

wlcstat.wlc_lcpoly module wlcstat.wlcave module wlcstat.wlcgreen module wlcstat.wlcstruc module

Z

zyz_from_matrix() (in module wlcstat.chromo)